5D8A image
Entry Detail
PDB ID:
5D8A
Keywords:
Title:
Crystal structure of recombinant foot-and-mouth-disease virus A22-H2093F empty capsid
Biological Source:
PDB Version:
Deposition Date:
2015-08-16
Release Date:
2015-09-23
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.21
R-Value Work:
0.20
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:VP1
Chain IDs:A
Chain Length:211
Number of Molecules:1
Biological Source:Foot-and-mouth disease virus - type A
Polymer Type:polypeptide(L)
Description:VP2
Mutations:H93F
Chain IDs:B
Chain Length:218
Number of Molecules:1
Biological Source:Foot-and-mouth disease virus - type A
Polymer Type:polypeptide(L)
Description:VP3
Chain IDs:C
Chain Length:221
Number of Molecules:1
Biological Source:Foot-and-mouth disease virus - type A
Polymer Type:polypeptide(L)
Description:VP4
Chain IDs:D
Chain Length:85
Number of Molecules:1
Biological Source:Foot-and-mouth disease virus - type A
Primary Citation
Structure-based energetics of protein interfaces guides foot-and-mouth disease virus vaccine design.
Nat.Struct.Mol.Biol. 22 788 794 (2015)
PMID: 26389739 DOI: 10.1038/nsmb.3096

Abstact

Virus capsids are primed for disassembly, yet capsid integrity is key to generating a protective immune response. Foot-and-mouth disease virus (FMDV) capsids comprise identical pentameric protein subunits held together by tenuous noncovalent interactions and are often unstable. Chemically inactivated or recombinant empty capsids, which could form the basis of future vaccines, are even less stable than live virus. Here we devised a computational method to assess the relative stability of protein-protein interfaces and used it to design improved candidate vaccines for two poorly stable, but globally important, serotypes of FMDV: O and SAT2. We used a restrained molecular dynamics strategy to rank mutations predicted to strengthen the pentamer interfaces and applied the results to produce stabilized capsids. Structural analyses and stability assays confirmed the predictions, and vaccinated animals generated improved neutralizing-antibody responses to stabilized particles compared to parental viruses and wild-type capsids.

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