5D63 image
Entry Detail
PDB ID:
5D63
Keywords:
Title:
MOA-Z-VAD-fmk inhibitor complex, direct/inverted dual orientation
Biological Source:
PDB Version:
Deposition Date:
2015-08-11
Release Date:
2016-03-02
Method Details:
Experimental Method:
Resolution:
1.65 Å
R-Value Free:
0.18
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 63 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Agglutinin
Chain IDs:A
Chain Length:293
Number of Molecules:1
Biological Source:Marasmius oreades
Polymer Type:polypeptide(L)
Description:Z-VAD-fmk
Chain IDs:B (auth: L)
Chain Length:5
Number of Molecules:1
Biological Source:synthetic construct
Peptide-like Molecules
PRD_000338
Primary Citation
An Unusual Member of the Papain Superfamily: Mapping the Catalytic Cleft of the Marasmius oreades agglutinin (MOA) with a Caspase Inhibitor.
Plos One 11 e0149407 e0149407 (2016)
PMID: 26901797 DOI: 10.1371/journal.pone.0149407

Abstact

Papain-like cysteine proteases (PLCPs) constitute the largest group of thiol-based protein degrading enzymes and are characterized by a highly conserved fold. They are found in bacteria, viruses, plants and animals and involved in a number of physiological and pathological processes, parasitic infections and host defense, making them interesting targets for drug design. The Marasmius oreades agglutinin (MOA) is a blood group B-specific fungal chimerolectin with calcium-dependent proteolytic activity. The proteolytic domain of MOA presents a unique structural arrangement, yet mimicking the main structural elements in known PLCPs. Here we present the X-ray crystal structure of MOA in complex with Z-VAD-fmk, an irreversible caspase inhibitor known to cross-react with PLCPs. The structural data allow modeling of the substrate binding geometry and mapping of the fundamental enzyme-substrate interactions. The new information consolidates MOA as a new, yet strongly atypical member of the papain superfamily. The reported complex is the first published structure of a PLCP in complex with the well characterized caspase inhibitor Z-VAD-fmk.

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