5D3Q image
Entry Detail
PDB ID:
5D3Q
Keywords:
Title:
Dynamin 1 GTPase-BSE fusion dimer complexed with GDP
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2015-08-06
Release Date:
2015-12-02
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Dynamin-1,Dynamin-1
Chain IDs:A, B
Chain Length:345
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Crystal structure of the GTPase domain and the bundle signalling element of dynamin in the GDP state.
Biochem.Biophys.Res.Commun. 469 76 80 (2016)
PMID: 26612256 DOI: 10.1016/j.bbrc.2015.11.074

Abstact

Dynamin is the prototype of a family of large multi-domain GTPases. The 100 kDa protein is a key player in clathrin-mediated endocytosis, where it cleaves off vesicles from membranes using the energy from GTP hydrolysis. We have solved the high resolution crystal structure of a fusion protein of the GTPase domain and the bundle signalling element (BSE) of dynamin 1 liganded with GDP. The structure provides a hitherto missing snapshot of the GDP state of the hydrolytic cycle of dynamin and reveals how the switch I region moves away from the active site after GTP hydrolysis and release of inorganic phosphate. Comparing our structure of the GDP state with the known structures of the GTP state, the transition state and the nucleotide-free state of dynamin 1 we describe the structural changes through the hydrolytic cycle.

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