5D3M image
Deposition Date 2015-08-06
Release Date 2016-04-06
Last Version Date 2024-01-10
Entry Detail
PDB ID:
5D3M
Title:
Folate ECF transporter: AMPPNP bound state
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.30 Å
R-Value Free:
0.28
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Energy-coupling factor transporter ATP-binding protein EcfA1
Gene (Uniprot):ecfA1
Chain IDs:A, E
Chain Length:298
Number of Molecules:2
Biological Source:Lactobacillus delbrueckii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Energy-coupling factor transporter ATP-binding protein EcfA2
Gene (Uniprot):ecfA2
Chain IDs:B, F
Chain Length:287
Number of Molecules:2
Biological Source:Lactobacillus delbrueckii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:S-component for folate
Gene (Uniprot):Ldb1625
Chain IDs:C, G
Chain Length:184
Number of Molecules:2
Biological Source:Lactobacillus delbrueckii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Energy-coupling factor transporter transmembrane protein EcfT
Chain IDs:D, H
Chain Length:265
Number of Molecules:2
Biological Source:Lactobacillus delbrueckii
Ligand Molecules
Primary Citation
Structural insight in the toppling mechanism of an energy-coupling factor transporter.
Nat Commun 7 11072 11072 (2016)
PMID: 27026363 DOI: 10.1038/ncomms11072

Abstact

Energy-coupling factor (ECF) transporters mediate uptake of micronutrients in prokaryotes. The transporters consist of an S-component that binds the transported substrate and an ECF module (EcfAA'T) that binds and hydrolyses ATP. The mechanism of transport is poorly understood but presumably involves an unusual step in which the membrane-embedded S-component topples over to carry the substrate across the membrane. In many ECF transporters, the S-component dissociates from the ECF module after transport. Subsequently, substrate-bound S-components out-compete the empty proteins for re-binding to the ECF module in a new round of transport. Here we present crystal structures of the folate-specific transporter ECF-FolT from Lactobacillus delbrueckii. Interaction of the ECF module with FolT stabilizes the toppled state, and simultaneously destroys the high-affinity folate-binding site, allowing substrate release into the cytosol. We hypothesize that differences in the kinetics of toppling can explain how substrate-loaded FolT out-competes apo-FolT for association with the ECF module.

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Primary Citation of related structures
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