5D2A image
Entry Detail
PDB ID:
5D2A
Title:
Bifunctional dendrimers
Biological Source:
PDB Version:
Deposition Date:
2015-08-05
Release Date:
2016-02-10
Method Details:
Experimental Method:
Resolution:
2.13 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 63 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Fucose-binding lectin
Chain IDs:A, B
Chain Length:114
Number of Molecules:2
Biological Source:Pseudomonas aeruginosa
Polymer Type:polypeptide(L)
Description:ZDC-ALA-PRO-ALA-LYS-PHE-CYS-ALA-PRO-ALA-PHB-GAL
Chain IDs:C
Chain Length:6
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Description:ZDC-ALA-PRO-ALA-LYS-PHE-CYS-ALA-PRO-ALA-PHB-GAL
Chain IDs:D, E
Chain Length:3
Number of Molecules:2
Biological Source:synthetic construct
Primary Citation
Overcoming antibiotic resistance inPseudomonas aeruginosabiofilms using glycopeptide dendrimers.
Chem Sci 7 166 182 (2016)
PMID: 29896342 DOI: 10.1039/c5sc03635f

Abstact

Antibiotic resistance in the opportunistic pathogen Pseudomonas aeruginosa is partly caused by biofilms forming a physical barrier to antibiotic penetration. Here we focused on modifying tetravalent glycopeptide dendrimer ligands of P. aeruginosa lectins LecB or LecA to increase their biofilm inhibition activity. First heteroglycoclusters were investigated displaying one pair each of LecB specific fucosyl groups and LecA specific galactosyl groups and binding simultaneously to both lectins, one of which gave the first fully resolved crystal structure of a peptide dendrimer as LecB complex providing a structural model for dendrimer-lectin interactions (PDB ; 5D2A). Biofilm inhibition was increased by introducing additional cationic residues in these dendrimers but resulted in bactericidal effects similar to those of non-glycosylated polycationic antimicrobial peptide dendrimers. In a second approach dendrimers displaying four copies of the natural LecB ligand Lewisa were prepared leading to slightly stronger LecB binding and biofilm inhibition. Finally synergistic application of a LecB specific non-bactericidal antibiofilm dendrimer with the antibiotic tobramycin at sub-inhibitory concentrations of both compounds allowed effective biofilm inhibition and dispersal.

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