5CZE image
Deposition Date 2015-07-31
Release Date 2016-08-24
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5CZE
Keywords:
Title:
Crystal structure of the PaaA2-ParE2 antitoxin-toxin complex
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.82 Å
R-Value Free:
0.30
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PaaA2
Chain IDs:A, C, E (auth: I), G (auth: K)
Chain Length:71
Number of Molecules:4
Biological Source:Escherichia coli O157:H7 str. SS52
Polymer Type:polypeptide(L)
Molecule:Plasmid stabilization protein ParE
Gene (Uniprot):B6R31_005353, DIV22_27500, E2863_01299, GNW61_10835, GOP25_17165, HVV39_00185, J0541_005258
Chain IDs:B, D, F (auth: J), H (auth: L)
Chain Length:100
Number of Molecules:4
Biological Source:Escherichia coli O157:H7 str. SS52
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Ligand Molecules
Primary Citation
A unique hetero-hexadecameric architecture displayed by the Escherichia coli O157 PaaA2-ParE2 antitoxin-toxin complex.
J.Mol.Biol. 428 1589 1603 (2016)
PMID: 26996937 DOI: 10.1016/j.jmb.2016.03.007

Abstact

Many bacterial pathogens modulate their metabolic activity, virulence and pathogenicity through so-called "toxin-antitoxin" (TA) modules. The genome of the human pathogen Escherichia coli O157 contains two three-component TA modules related to the known parDE module. Here, we show that the toxin EcParE2 maps in a branch of the RelE/ParE toxin superfamily that is distinct from the branches that contain verified gyrase and ribosome inhibitors. The structure of EcParE2 closely resembles that of Caulobacter crescentus ParE but shows a distinct pattern of conserved surface residues, in agreement with its apparent inability to interact with GyrA. The antitoxin EcPaaA2 is characterized by two α-helices (H1 and H2) that serve as molecular recognition elements to wrap itself around EcParE2. Both EcPaaA2 H1 and H2 are required to sustain a high-affinity interaction with EcParE2 and for the inhibition of EcParE2-mediated killing in vivo. Furthermore, evidence demonstrates that EcPaaA2 H2, but not H1, determines specificity for EcParE2. The initially formed EcPaaA2-EcParE2 heterodimer then assembles into a hetero-hexadecamer, which is stable in solution and is formed in a highly cooperative manner. Together these findings provide novel data on quaternary structure, TA interactions and activity of a hitherto poorly characterized family of TA modules.

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Primary Citation of related structures