5CYN image
Deposition Date 2015-07-30
Release Date 2015-12-16
Last Version Date 2023-09-27
Entry Detail
PDB ID:
5CYN
Title:
JC Virus large T-antigen origin binding domain F258L mutant
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
I 41
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Large T antigen
Mutations:F258L
Chain IDs:A
Chain Length:130
Number of Molecules:1
Biological Source:JC polyomavirus
Ligand Molecules
Primary Citation
Structural Based Analyses of the JC Virus T-Antigen F258L Mutant Provides Evidence for DNA Dependent Conformational Changes in the C-Termini of Polyomavirus Origin Binding Domains.
Plos Pathog. 12 e1005362 e1005362 (2016)
PMID: 26735515 DOI: 10.1371/journal.ppat.1005362

Abstact

The replication of human polyomavirus JCV, which causes Progressive Multifocal Leukoencephalopathy, is initiated by the virally encoded T-antigen (T-ag). The structure of the JC virus T-ag origin-binding domain (OBD) was recently solved by X-ray crystallography. This structure revealed that the OBD contains a C-terminal pocket, and that residues from the multifunctional A1 and B2 motifs situated on a neighboring OBD molecule dock into the pocket. Related studies established that a mutation in a pocket residue (F258L) rendered JCV T-ag unable to support JCV DNA replication. To establish why this mutation inactivated JCV T-ag, we have solved the structure of the F258L JCV T-ag OBD mutant. Based on this structure, it is concluded that the structural consequences of the F258L mutation are limited to the pocket region. Further analyses, utilizing the available polyomavirus OBD structures, indicate that the F258 region is highly dynamic and that the relative positions of F258 are governed by DNA binding. The possible functional consequences of the DNA dependent rearrangements, including promotion of OBD cycling at the replication fork, are discussed.

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Primary Citation of related structures