5CVA image
Deposition Date 2015-07-25
Release Date 2016-08-10
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5CVA
Title:
Crystal structure of the type IX collagen NC2 hetero-trimerization domain with a guest fragment a1a2a1 of type I collagen
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.27
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Collagen alpha-2(I) chain,Collagen alpha-1(IX) chain
Gene (Uniprot):COL1A2, COL9A1
Chain IDs:A, D
Chain Length:71
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Collagen alpha-1(I) chain,Collagen alpha-2(IX) chain
Gene (Uniprot):COL1A1, COL9A2
Chain IDs:B, E
Chain Length:71
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Collagen alpha-1(I) chain,Collagen alpha-3(IX) chain
Gene (Uniprot):COL1A1, COL9A3
Chain IDs:C, F
Chain Length:72
Number of Molecules:2
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Ligand Molecules
Primary Citation
Structural insight for chain selection and stagger control in collagen.
Sci Rep 6 37831 37831 (2016)
PMID: 27897211 DOI: 10.1038/srep37831

Abstact

Collagen plays a fundamental role in all known metazoans. In collagens three polypeptides form a unique triple-helical structure with a one-residue stagger to fit every third glycine residue in the inner core without disturbing the poly-proline type II helical conformation of each chain. There are homo- and hetero-trimeric types of collagen consisting of one, two or three distinct chains. Thus there must be mechanisms that control composition and stagger during collagen folding. Here, we uncover the structural basis for both chain selection and stagger formation of a collagen molecule. Three distinct chains (α1, α2 and α3) of the non-collagenous domain 2 (NC2) of type IX collagen are assembled to guide triple-helical sequences in the leading, middle and trailing positions. This unique domain opens the door for generating any fragment of collagen in its native composition and stagger.

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Primary Citation of related structures