5CTM image
Deposition Date 2015-07-24
Release Date 2015-11-18
Last Version Date 2025-04-02
Entry Detail
PDB ID:
5CTM
Keywords:
Title:
Structure of BPu1 beta-lactamase
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.00 Å
R-Value Free:
0.13
R-Value Work:
0.12
R-Value Observed:
0.12
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Beta-lactamase
Gene (Uniprot):BPUM_2340
Chain IDs:A, B
Chain Length:233
Number of Molecules:2
Biological Source:Bacillus pumilus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
KCX A LYS modified residue
Primary Citation
Class D beta-lactamases do exist in Gram-positive bacteria.
Nat.Chem.Biol. 12 9 14 (2016)
PMID: 26551395 DOI: 10.1038/nchembio.1950

Abstact

Production of β-lactamases of one of four molecular classes (A, B, C and D) is the major mechanism of bacterial resistance to β-lactams, the largest class of antibiotics, which have saved countless lives since their inception 70 years ago. Although several hundred efficient class D enzymes have been identified in Gram-negative pathogens over the last four decades, none have been reported in Gram-positive bacteria. Here we demonstrate that efficient class D β-lactamases capable of hydrolyzing a wide array of β-lactam substrates are widely disseminated in various species of environmental Gram-positive organisms. Class D enzymes of Gram-positive bacteria have a distinct structural architecture and employ a unique substrate-binding mode that is quite different from that of all currently known class A, C and D β-lactamases. These enzymes thus constitute a previously unknown reservoir of novel antibiotic-resistance enzymes.

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Primary Citation of related structures