ISDA

Deposition Date 2015-07-23

Release Date 2015-10-14

Last Version Date 2024-03-06

Entry Detail

PDB ID:

5CTB

Keywords:

TRANSFERASE/TRANSFERASE INHIBITOR

Title:

Humanized yeast ACC carboxyltransferase domain bound to 6,7-dimethyl-1'-[(7-methyl-1H-indazol-5-yl)carbonyl]spiro[chromene-2,4'-piperidin]-4(3H)-one

Biological Source:

Source Organism:

Saccharomyces cerevisiae (Taxon ID: 4932)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.40 Å

R-Value Free:

0.19

R-Value Work:

0.17

R-Value Observed:

0.17

Space Group:

C 1 2 1

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Acetyl-CoA carboxylase
Gene (Uniprot):ACC1
Mutations:E1919Q,P1920A,H1925F,P1760S,I1762L,M1765V,Q2028E,M2030T,G2032E
Chain IDs:A, B, C
Chain Length:769
Number of Molecules:3
Biological Source:Saccharomyces cerevisiae

UniProt ID:Q00955 Pfam ID:PF01039 EC:6.3.4.14

Ligand Molecules

57J

SO4

Primary Citation

Discovery of spirocyclic-diamine inhibitors of mammalian acetyl CoA-carboxylase.

Kung, D.W, Griffith, D.A, Esler, W.P, Vajdos, F.F, Mathiowetz, A.M, Doran, S.D, Amor, P.A, Bagley, S.W, Banks, T, Cabral, S, Ford, K, Garcia-Irizarry, C.N, Landis, M.S, Loomis, K, McPherson, K, Niosi, M, Rockwell, K.L, Rose, C, Smith, A.C, Southers, J.A, Tapley, S, Tu, M, Valentine, J.J.Show

Bioorg.Med.Chem.Lett. 25 5352 5356 (2015)

PMID: 26411795 DOI: 10.1016/j.bmcl.2015.09.035

Abstact

A novel series of spirocyclic-diamine based, isoform non-selective inhibitors of acetyl-CoA carboxylase (ACC) is described. These spirodiamine derivatives were discovered by design of a library to mimic the structural rigidity and hydrogen-bonding pattern observed in the co-crystal structure of spirochromanone inhibitor I. The lead compound 3.5.1 inhibited de novo lipogenesis in rat hepatocytes, with an IC50 of 0.30 μM.

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Primary Citation of related structures