5CSB image
Entry Detail
PDB ID:
5CSB
Keywords:
Title:
The crystal structure of beta2-microglobulin D76N mutant at room temperature
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2015-07-23
Release Date:
2016-08-10
Method Details:
Experimental Method:
Resolution:
1.72 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
I 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Beta-2-microglobulin
Mutations:D76N
Chain IDs:A
Chain Length:100
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Conformational dynamics in crystals reveal the molecular bases for D76N beta-2 microglobulin aggregation propensity.
Nat Commun 9 1658 1658 (2018)
PMID: 29695721 DOI: 10.1038/s41467-018-04078-y

Abstact

Spontaneous aggregation of folded and soluble native proteins in vivo is still a poorly understood process. A prototypic example is the D76N mutant of beta-2 microglobulin (β2m) that displays an aggressive aggregation propensity. Here we investigate the dynamics of β2m by X-ray crystallography, solid-state NMR, and molecular dynamics simulations to unveil the effects of the D76N mutation. Taken together, our data highlight the presence of minor disordered substates in crystalline β2m. The destabilization of the outer strands of D76N β2m accounts for the increased aggregation propensity. Furthermore, the computational modeling reveals a network of interactions with residue D76 as a keystone: this model allows predicting the stability of several point mutants. Overall, our study shows how the study of intrinsic dynamics in crystallo can provide crucial answers on protein stability and aggregation propensity. The comprehensive approach here presented may well be suited for the study of other folded amyloidogenic proteins.

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