5CO1 image
Deposition Date 2015-07-19
Release Date 2016-11-02
Last Version Date 2024-03-06
Entry Detail
PDB ID:
5CO1
Keywords:
Title:
Crystal Structure of Zebrafish Protocadherin-19 EC3-4
Biological Source:
Source Organism:
Danio rerio (Taxon ID: 7955)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.51 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protocadherin-19 isoform 1
Chain IDs:A, B, C, D
Chain Length:219
Number of Molecules:4
Biological Source:Danio rerio
Ligand Molecules
Primary Citation
Structural determinants of adhesion by Protocadherin-19 and implications for its role in epilepsy.
Elife 5 ? ? (2016)
PMID: 27787195 DOI: 10.7554/eLife.18529

Abstact

Non-clustered δ-protocadherins are homophilic cell adhesion molecules essential for the development of the vertebrate nervous system, as several are closely linked to neurodevelopmental disorders. Mutations in protocadherin-19 (PCDH19) result in a female-limited, infant-onset form of epilepsy (PCDH19-FE). Over 100 mutations in PCDH19 have been identified in patients with PCDH19-FE, about half of which are missense mutations in the adhesive extracellular domain. Neither the mechanism of homophilic adhesion by PCDH19, nor the biochemical effects of missense mutations are understood. Here we present a crystallographic structure of the minimal adhesive fragment of the zebrafish Pcdh19 extracellular domain. This structure reveals the adhesive interface for Pcdh19, which is broadly relevant to both non-clustered δ and clustered protocadherin subfamilies. In addition, we show that several PCDH19-FE missense mutations localize to the adhesive interface and abolish Pcdh19 adhesion in in vitro assays, thus revealing the biochemical basis of their pathogenic effects during brain development.

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Disease

Primary Citation of related structures