5CNR image
Deposition Date 2015-07-18
Release Date 2016-03-09
Last Version Date 2023-09-27
Entry Detail
PDB ID:
5CNR
Keywords:
Title:
Crystal structure-guided design of self-assembling RNA nano triangles
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.59 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
H 3 2
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:RNA (5'-R(*GP*UP*CP*UP*AP*CP*CP*CP*AP*CP*CP*UP*CP*GP*CP*C)-3')
Chain IDs:A, C (auth: E)
Chain Length:16
Number of Molecules:2
Biological Source:Seneca valley virus
Polymer Type:polyribonucleotide
Molecule:RNA (5'-R(*AP*GP*AP*GP*GP*AP*CP*GP*GP*CP*G)-3')
Chain IDs:B, D (auth: F)
Chain Length:11
Number of Molecules:2
Biological Source:Seneca valley virus
Ligand Molecules
Primary Citation
Crystal-Structure-Guided Design of Self-Assembling RNA Nanotriangles.
Angew.Chem.Int.Ed.Engl. 55 4097 4100 (2016)
PMID: 26914842 DOI: 10.1002/anie.201600233

Abstact

RNA nanotechnology uses RNA structural motifs to build nanosized architectures that assemble through selective base-pair interactions. Herein, we report the crystal-structure-guided design of highly stable RNA nanotriangles that self-assemble cooperatively from short oligonucleotides. The crystal structure of an 81 nucleotide nanotriangle determined at 2.6 Å resolution reveals the so-far smallest circularly closed nanoobject made entirely of double-stranded RNA. The assembly of the nanotriangle architecture involved RNA corner motifs that were derived from ligand-responsive RNA switches, which offer the opportunity to control self-assembly and dissociation.

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Primary Citation of related structures