5CMV image
Entry Detail
PDB ID:
5CMV
Keywords:
Title:
Ultrafast dynamics in myoglobin: dark-state, CO-ligated structure
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2015-07-17
Release Date:
2015-09-16
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.20
R-Value Work:
0.15
R-Value Observed:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Myoglobin
Chain IDs:A
Chain Length:152
Number of Molecules:1
Biological Source:Equus caballus
Primary Citation

Abstact

The hemoprotein myoglobin is a model system for the study of protein dynamics. We used time-resolved serial femtosecond crystallography at an x-ray free-electron laser to resolve the ultrafast structural changes in the carbonmonoxy myoglobin complex upon photolysis of the Fe-CO bond. Structural changes appear throughout the protein within 500 femtoseconds, with the C, F, and H helices moving away from the heme cofactor and the E and A helices moving toward it. These collective movements are predicted by hybrid quantum mechanics/molecular mechanics simulations. Together with the observed oscillations of residues contacting the heme, our calculations support the prediction that an immediate collective response of the protein occurs upon ligand dissociation, as a result of heme vibrational modes coupling to global modes of the protein.

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