5CM2 image
Entry Detail
PDB ID:
5CM2
Keywords:
Title:
Structure of Y. lipolytica Trm9-Trm112 complex, a methyltransferase modifying U34 in the anticodon loop of some tRNAs
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2015-07-16
Release Date:
2015-10-21
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
I 4 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:TRNA METHYLTRANSFERASE ACTIVATOR SUBUNIT
Chain IDs:B (auth: M)
Chain Length:130
Number of Molecules:1
Biological Source:Yarrowia lipolytica CLIB122
Polymer Type:polypeptide(L)
Description:TRNA METHYLTRANSFERASE
Chain IDs:A (auth: Z)
Chain Length:205
Number of Molecules:1
Biological Source:Yarrowia lipolytica CLIB122
Ligand Molecules
Primary Citation
Insights into molecular plasticity in protein complexes from Trm9-Trm112 tRNA modifying enzyme crystal structure.
Nucleic Acids Res. 43 10989 11002 (2015)
PMID: 26438534 DOI: 10.1093/nar/gkv1009

Abstact

Most of the factors involved in translation (tRNA, rRNA and proteins) are subject to post-transcriptional and post-translational modifications, which participate in the fine-tuning and tight control of ribosome and protein synthesis processes. In eukaryotes, Trm112 acts as an obligate activating platform for at least four methyltransferases (MTase) involved in the modification of 18S rRNA (Bud23), tRNA (Trm9 and Trm11) and translation termination factor eRF1 (Mtq2). Trm112 is then at a nexus between ribosome synthesis and function. Here, we present a structure-function analysis of the Trm9-Trm112 complex, which is involved in the 5-methoxycarbonylmethyluridine (mcm(5)U) modification of the tRNA anticodon wobble position and hence promotes translational fidelity. We also compare the known crystal structures of various Trm112-MTase complexes, highlighting the structural plasticity allowing Trm112 to interact through a very similar mode with its MTase partners, although those share less than 20% sequence identity.

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