5CKG image
Entry Detail
PDB ID:
5CKG
Keywords:
Title:
Human beta-2 microglobulin mutant V85E
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2015-07-15
Release Date:
2016-05-18
Method Details:
Experimental Method:
Resolution:
1.75 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Beta-2-microglobulin
Mutations:V85E
Chain IDs:A, B
Chain Length:100
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Rational design of mutations that change the aggregation rate of a protein while maintaining its native structure and stability.
Sci Rep 6 25559 25559 (2016)
PMID: 27150430 DOI: 10.1038/srep25559

Abstact

A wide range of human diseases is associated with mutations that, destabilizing proteins native state, promote their aggregation. However, the mechanisms leading from folded to aggregated states are still incompletely understood. To investigate these mechanisms, we used a combination of NMR spectroscopy and molecular dynamics simulations to compare the native state dynamics of Beta-2 microglobulin (β2m), whose aggregation is associated with dialysis-related amyloidosis, and its aggregation-resistant mutant W60G. Our results indicate that W60G low aggregation propensity can be explained, beyond its higher stability, by an increased average protection of the aggregation-prone residues at its surface. To validate these findings, we designed β2m variants that alter the aggregation-prone exposed surface of wild-type and W60G β2m modifying their aggregation propensity. These results allowed us to pinpoint the role of dynamics in β2m aggregation and to provide a new strategy to tune protein aggregation by modulating the exposure of aggregation-prone residues.

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Primary Citation of related structures