5CK7 image
Entry Detail
PDB ID:
5CK7
Keywords:
Title:
Mouse ADP-dependent Glucokinase; AMP bound
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2015-07-15
Release Date:
2015-11-18
Method Details:
Experimental Method:
Resolution:
2.99 Å
R-Value Free:
0.24
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:ADP-dependent glucokinase
Chain IDs:A
Chain Length:486
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
The Structural and Functional Characterization of Mammalian ADP-dependent Glucokinase.
J.Biol.Chem. 291 3694 3704 (2016)
PMID: 26555263 DOI: 10.1074/jbc.M115.679902

Abstact

The enzyme-catalyzed phosphorylation of glucose to glucose-6-phosphate is a reaction central to the metabolism of all life. ADP-dependent glucokinase (ADPGK) catalyzes glucose-6-phosphate production, utilizing ADP as a phosphoryl donor in contrast to the more well characterized ATP-requiring hexokinases. ADPGK is found in Archaea and metazoa; in Archaea, ADPGK participates in a glycolytic role, but a function in most eukaryotic cell types remains unknown. We have determined structures of the eukaryotic ADPGK revealing a ribokinase-like tertiary fold similar to archaeal orthologues but with significant differences in some secondary structural elements. Both the unliganded and the AMP-bound ADPGK structures are in the "open" conformation. The structures reveal the presence of a disulfide bond between conserved cysteines that is positioned at the nucleotide-binding loop of eukaryotic ADPGK. The AMP-bound ADPGK structure defines the nucleotide-binding site with one of the disulfide bond cysteines coordinating the AMP with its main chain atoms, a nucleotide-binding motif that appears unique to eukaryotic ADPGKs. Key amino acids at the active site are structurally conserved between mammalian and archaeal ADPGK, and site-directed mutagenesis has confirmed residues essential for enzymatic activity. ADPGK is substrate inhibited by high glucose concentration and shows high specificity for glucose, with no activity for other sugars, as determined by NMR spectroscopy, including 2-deoxyglucose, the glucose analogue used for tumor detection by positron emission tomography.

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