5CGH image
Entry Detail
PDB ID:
5CGH
Title:
Yeast 20S proteasome beta5-G48C mutant in complex with alpha-chloroacetamide 5
Biological Source:
PDB Version:
Deposition Date:
2015-07-09
Release Date:
2015-12-02
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.22
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Proteasome subunit alpha type-2
Chain IDs:A, O
Chain Length:250
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Description:Proteasome subunit alpha type-3
Chain IDs:B, P
Chain Length:258
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Description:Proteasome subunit alpha type-4
Chain IDs:C, Q
Chain Length:5
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Description:Proteasome subunit alpha type-5
Chain IDs:D, R
Chain Length:260
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Description:Proteasome subunit alpha type-6
Chain IDs:E, S
Chain Length:234
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Description:Probable proteasome subunit alpha type-7
Chain IDs:F, T
Chain Length:288
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Description:Proteasome subunit alpha type-1
Chain IDs:G, U
Chain Length:252
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Description:Proteasome subunit beta type-2
Chain IDs:H, V
Chain Length:232
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Description:Proteasome subunit beta type-3
Chain IDs:I, W
Chain Length:205
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Description:Proteasome subunit beta type-4
Chain IDs:J, X
Chain Length:198
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Description:Proteasome subunit beta type-5
Mutations:G48C
Chain IDs:K, Y
Chain Length:212
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Description:Proteasome subunit beta type-6
Chain IDs:L, Z
Chain Length:222
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Description:Proteasome subunit beta type-7
Chain IDs:M, AA (auth: a)
Chain Length:250
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Description:Proteasome subunit beta type-1
Chain IDs:N, BA (auth: b)
Chain Length:258
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Description:carfilzomib-alpha-chloroacetamide 5
Chain IDs:CA (auth: c), DA (auth: g)
Chain Length:5
Number of Molecules:2
Biological Source:synthetic construct
Primary Citation
Selective Inhibition of the Immunoproteasome by Structure-Based Targeting of a Non-catalytic Cysteine.
Angew.Chem.Int.Ed.Engl. 54 15888 15891 (2015)
PMID: 26563572 DOI: 10.1002/anie.201506631

Abstact

Clinically applied proteasome inhibitors induce cell death by concomitant blockage of constitutive and immunoproteasomes. In contrast, selective immunoproteasome inhibition is less cytotoxic and has the potential to modulate chronic inflammation and autoimmune diseases. In this study, we rationally designed decarboxylated peptides that covalently target a non-catalytic cysteine of the immunoproteasome subunit β5i with α-chloroacetamide-containing sidechains. The enhanced isoform specificity decreased cytotoxic effects and the compound suppressed the production of inflammatory cytokines. Structure-based optimization led to over 150-fold selectivity for subunit β5i over β5c. This new compound class provides a promising starting point for the development of selective immunoproteasome inhibitors as potential anti-inflammatory agents.

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