5CED image
Deposition Date 2015-07-06
Release Date 2015-12-09
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5CED
Keywords:
Title:
Penicillin G Acylated Bd3459 Predatory Endopeptidase from Bdellovibrio bacteriovorus in complex with immunity protein Bd3460
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.02 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Bd3459
Gene (Uniprot):Bd3459
Mutagens:K38M
Chain IDs:A
Chain Length:446
Number of Molecules:1
Biological Source:Bdellovibrio bacteriovorus HD100
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Bd3460
Gene (Uniprot):Bd3460
Chain IDs:B
Chain Length:230
Number of Molecules:1
Biological Source:Bdellovibrio bacteriovorus HD100
Ligand Molecules
Primary Citation
Ankyrin-mediated self-protection during cell invasion by the bacterial predator Bdellovibrio bacteriovorus.
Nat Commun 6 8884 8884 (2015)
PMID: 26626559 DOI: 10.1038/ncomms9884

Abstact

Predatory Bdellovibrio bacteriovorus are natural antimicrobial organisms, killing other bacteria by whole-cell invasion. Self-protection against prey-metabolizing enzymes is important for the evolution of predation. Initial prey entry involves the predator's peptidoglycan DD-endopeptidases, which decrosslink cell walls and prevent wasteful entry by a second predator. Here we identify and characterize a self-protection protein from B. bacteriovorus, Bd3460, which displays an ankyrin-based fold common to intracellular pathogens of eukaryotes. Co-crystal structures reveal Bd3460 complexation of dual targets, binding a conserved epitope of each of the Bd3459 and Bd0816 endopeptidases. Complexation inhibits endopeptidase activity and cell wall decrosslinking in vitro. Self-protection is vital - ΔBd3460 Bdellovibrio deleteriously decrosslink self-peptidoglycan upon invasion, adopt a round morphology, and lose predatory capacity and cellular integrity. Our analysis provides the first mechanistic examination of self-protection in Bdellovibrio, documents protection-multiplicity for products of two different genomic loci, and reveals an important evolutionary adaptation to an invasive predatory bacterial lifestyle.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
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