5CCL image
Deposition Date 2015-07-02
Release Date 2015-09-09
Last Version Date 2024-03-06
Entry Detail
PDB ID:
5CCL
Title:
Crystal structure of SMYD3 with SAM and oxindole compound
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.16
R-Value Work:
0.11
R-Value Observed:
0.11
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Histone-lysine N-methyltransferase SMYD3
Gene (Uniprot):SMYD3
Chain IDs:A
Chain Length:432
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Novel Oxindole Sulfonamides and Sulfamides: EPZ031686, the First Orally Bioavailable Small Molecule SMYD3 Inhibitor.
Acs Med.Chem.Lett. 7 134 138 (2016)
PMID: 26985287 DOI: 10.1021/acsmedchemlett.5b00272

Abstact

SMYD3 has been implicated in a range of cancers; however, until now no potent selective small molecule inhibitors have been available for target validation studies. A novel oxindole series of SMYD3 inhibitors was identified through screening of the Epizyme proprietary histone methyltransferase-biased library. Potency optimization afforded two tool compounds, sulfonamide EPZ031686 and sulfamide EPZ030456, with cellular potency at a level sufficient to probe the in vitro biology of SMYD3 inhibition. EPZ031686 shows good bioavailability following oral dosing in mice making it a suitable tool for potential in vivo target validation studies.

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Primary Citation of related structures