5CB7 image
Deposition Date 2015-06-30
Release Date 2016-06-08
Last Version Date 2024-03-06
Entry Detail
PDB ID:
5CB7
Title:
Crystallographic structure of human rotavirus K8 VP8* in complex with A-type HBGA
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.35 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Outer capsid protein VP4
Mutagens:Y149D
Chain IDs:A, B
Chain Length:161
Number of Molecules:2
Biological Source:Rotavirus A (strain Human/Japan/K8/1977 G1-P3A[9]-Ix-Rx-Cx-Mx-A1-Nx-Tx-Ex-H3)
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
FUC C FUC -L
GAL F GAL -D
Primary Citation
Substantial Receptor-induced Structural Rearrangement of Rotavirus VP8*: Potential Implications for Cross-Species Infection.
Chembiochem 16 2176 2181 (2015)
PMID: 26250751 DOI: 10.1002/cbic.201500360

Abstact

Rotavirus-cell binding is the essential first step in rotavirus infection. This binding is a major determinant of rotavirus tropism, as host cell invasion is necessary to initiate infection. Initial rotavirus-cell interactions are mediated by carbohydrate-recognizing domain VP8* of the rotavirus capsid spike protein VP4. Here, we report the first observation of significant structural rearrangement of VP8* from human and animal rotavirus strains upon glycan receptor binding. The structural adaptability of rotavirus VP8* delivers important insights into how human and animal rotaviruses utilize the wider range of cellular glycans identified as VP8* binding partners. Furthermore, our studies on rotaviruses with atypical genetic makeup provide information expected to be critical for understanding the mechanisms of animal rotavirus gene emergence in humans and support implementation of epidemiologic surveillance of animal reservoirs as well as future vaccination schemes.

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Primary Citation of related structures
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