5C9O image
Entry Detail
PDB ID:
5C9O
Title:
Crystal structure of recombinant PLL lectin from Photorhabdus luminescens at 1.5 A resolution
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2015-06-28
Release Date:
2016-10-19
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.15
R-Value Work:
0.13
R-Value Observed:
0.13
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:PLL lectin
Chain IDs:A
Chain Length:381
Number of Molecules:1
Biological Source:Photorhabdus luminescens
Ligand Molecules
Primary Citation
A Novel Fucose-binding Lectin from Photorhabdus luminescens (PLL) with an Unusual Heptabladed beta-Propeller Tetrameric Structure.
J.Biol.Chem. 291 25032 25049 (2016)
PMID: 27758853 DOI: 10.1074/jbc.M115.693473

Abstact

Photorhabdus luminescens is known for its symbiosis with the entomopathogenic nematode Heterorhabditis bacteriophora and its pathogenicity toward insect larvae. A hypothetical protein from P. luminescens was identified, purified from the native source, and characterized as an l-fucose-binding lectin, named P. luminescens lectin (PLL). Glycan array and biochemical characterization data revealed PLL to be specific toward l-fucose and the disaccharide glycan 3,6-O-Me2-Glcβ1-4(2,3-O-Me2)Rhaα-O-(p-C6H4)-OCH2CH2NH2 PLL was discovered to be a homotetramer with an intersubunit disulfide bridge. The crystal structures of native and recombinant PLL revealed a seven-bladed β-propeller fold creating seven putative fucose-binding sites per monomer. The crystal structure of the recombinant PLL·l-fucose complex confirmed that at least three sites were fucose-binding. Moreover, the crystal structures indicated that some of the other sites are masked either by the tetrameric nature of the lectin or by incorporation of the C terminus of the lectin into one of these sites. PLL exhibited an ability to bind to insect hemocytes and the cuticular surface of a nematode, H. bacteriophora.

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