5C9F image
Deposition Date 2015-06-26
Release Date 2015-10-14
Last Version Date 2024-03-06
Entry Detail
PDB ID:
5C9F
Keywords:
Title:
Crystal structure of a retropepsin-like aspartic protease from Rickettsia conorii
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ApRick protease
Gene (Uniprot):RC1339
Chain IDs:A, B, C, D
Chain Length:139
Number of Molecules:4
Biological Source:Rickettsia conorii
Primary Citation
Structure of RC1339/APRc from Rickettsia conorii, a retropepsin-like aspartic protease.
Acta Crystallogr. D Biol. Crystallogr. 71 2109 2118 (2015)
PMID: 26457434 DOI: 10.1107/S1399004715013905

Abstact

The crystal structures of two constructs of RC1339/APRc from Rickettsia conorii, consisting of either residues 105-231 or 110-231 followed by a His tag, have been determined in three different crystal forms. As predicted, the fold of a monomer of APRc resembles one-half of the mandatory homodimer of retroviral pepsin-like aspartic proteases (retropepsins), but the quaternary structure of the dimer of APRc differs from that of the canonical retropepsins. The observed dimer is most likely an artifact of the expression and/or crystallization conditions since it cannot support the previously reported enzymatic activity of this bacterial aspartic protease. However, the fold of the core of each monomer is very closely related to the fold of retropepsins from a variety of retroviruses and to a single domain of pepsin-like eukaryotic enzymes, and may represent a putative common ancestor of monomeric and dimeric aspartic proteases.

Legend

Protein

Chemical

Disease

Primary Citation of related structures