5C8V image
Deposition Date 2015-06-26
Release Date 2016-03-09
Last Version Date 2023-09-27
Entry Detail
PDB ID:
5C8V
Keywords:
Title:
Lucilia cuprina alpha esterase 7: Gly137Asp
Biological Source:
Source Organism:
Lucilia cuprina (Taxon ID: 7375)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.01 Å
R-Value Free:
0.24
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Carboxylic ester hydrolase
Gene (Uniprot):LcaE7
Mutations:D83A, G137D, M364L, I419F, A472T, I505T, K530E, D554G
Chain IDs:A
Chain Length:570
Number of Molecules:1
Biological Source:Lucilia cuprina
Primary Citation
Conformational Disorganization within the Active Site of a Recently Evolved Organophosphate Hydrolase Limits Its Catalytic Efficiency.
Biochemistry 55 1408 1417 (2016)
PMID: 26881849 DOI: 10.1021/acs.biochem.5b01322

Abstact

The evolution of new enzymatic activity is rarely observed outside of the laboratory. In the agricultural pest Lucilia cuprina, a naturally occurring mutation (Gly137Asp) in α-esterase 7 (LcαE7) results in acquisition of organophosphate hydrolase activity and confers resistance to organophosphate insecticides. Here, we present an X-ray crystal structure of LcαE7:Gly137Asp that, along with kinetic data, suggests that Asp137 acts as a general base in the new catalytic mechanism. Unexpectedly, the conformation of Asp137 observed in the crystal structure obstructs the active site and is not catalytically productive. Molecular dynamics simulations reveal that alternative, catalytically competent conformers of Asp137 are sampled on the nanosecond time scale, although these states are less populated. Thus, although the mutation introduces the new reactive group responsible for organophosphate detoxification, the catalytic efficiency appears to be limited by conformational disorganization: the frequent sampling of low-energy nonproductive states. This result is consistent with a model of molecular evolution in which initial function-changing mutations can result in enzymes that display only a fraction of their catalytic potential due to conformational disorganization.

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