5C8N image
Entry Detail
PDB ID:
5C8N
Title:
EGFR kinase domain mutant "TMLR" with compound 23
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2015-06-25
Release Date:
2015-10-28
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
I 2 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Epidermal growth factor receptor
Mutations:T790M, L858R, E865A, E866A, K867A
Chain IDs:A
Chain Length:331
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation

Abstact

Because of their increased activity against activating mutants, first-generation epidermal growth factor receptor (EGFR) kinase inhibitors have had remarkable success in treating non-small-cell lung cancer (NSCLC) patients, but acquired resistance, through a secondary mutation of the gatekeeper residue, means that clinical responses only last for 8-14 months. Addressing this unmet medical need requires agents that can target both of the most common double mutants: T790M/L858R (TMLR) and T790M/del(746-750) (TMdel). Herein we describe how a noncovalent double mutant selective lead compound was optimized using a strategy focused on the structure-guided increase in potency without added lipophilicity or reduction of three-dimensional character. Following successive rounds of design and synthesis it was discovered that cis-fluoro substitution on 4-hydroxy- and 4-methoxypiperidinyl groups provided synergistic, substantial, and specific potency gain through direct interaction with the enzyme and/or effects on the proximal ligand oxygen atom. Further development of the fluorohydroxypiperidine series resulted in the identification of a pair of diastereomers that showed 50-fold enzyme and cell based selectivity for T790M mutants over wild-type EGFR (wtEGFR) in vitro and pathway knock-down in an in vivo xenograft model.

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Primary Citation of related structures