5C8D image
Deposition Date 2015-06-25
Release Date 2015-09-30
Last Version Date 2024-03-06
Entry Detail
PDB ID:
5C8D
Title:
Crystal structure of full-length Thermus thermophilus CarH bound to adenosylcobalamin (dark state)
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Light-dependent transcriptional regulator CarH
Gene (Uniprot):TT_P0056
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:305
Number of Molecules:8
Biological Source:Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Primary Citation
Structural basis for gene regulation by a B12-dependent photoreceptor.
Nature 526 536 541 (2015)
PMID: 26416754 DOI: 10.1038/nature14950

Abstact

Photoreceptor proteins enable organisms to sense and respond to light. The newly discovered CarH-type photoreceptors use a vitamin B12 derivative, adenosylcobalamin, as the light-sensing chromophore to mediate light-dependent gene regulation. Here we present crystal structures of Thermus thermophilus CarH in all three relevant states: in the dark, both free and bound to operator DNA, and after light exposure. These structures provide visualizations of how adenosylcobalamin mediates CarH tetramer formation in the dark, how this tetramer binds to the promoter -35 element to repress transcription, and how light exposure leads to a large-scale conformational change that activates transcription. In addition to the remarkable functional repurposing of adenosylcobalamin from an enzyme cofactor to a light sensor, we find that nature also repurposed two independent protein modules in assembling CarH. These results expand the biological role of vitamin B12 and provide fundamental insight into a new mode of light-dependent gene regulation.

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