5C8B image
Deposition Date 2015-06-25
Release Date 2016-01-20
Last Version Date 2024-05-08
Entry Detail
PDB ID:
5C8B
Keywords:
Title:
Structural insights into the redesign of a sucrose phosphorylase by induced loop repositioning
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.28
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 43 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Sucrose phosphorylase
Mutagens:Q345F
Chain IDs:A (auth: B)
Chain Length:514
Number of Molecules:1
Biological Source:Bifidobacterium adolescentis
Ligand Molecules
Primary Citation
Redesign of the Active Site of Sucrose Phosphorylase through a Clash-Induced Cascade of Loop Shifts.
Chembiochem 17 33 36 (2016)
PMID: 26527586 DOI: 10.1002/cbic.201500514

Abstact

Sucrose phosphorylases have been applied in the enzymatic production of glycosylated compounds for decades. However, several desirable acceptors, such as flavonoids or stilbenoids, that exhibit diverse antimicrobial, anticarcinogenic or antioxidant properties, remain poor substrates. The Q345F exchange in sucrose phosphorylase from Bifidobacterium adolescentis allows efficient glucosylation of resveratrol, (+)-catechin and (-)-epicatechin in yields of up to 97 % whereas the wild-type enzyme favours sucrose hydrolysis. Three previously undescribed products are made available. The crystal structure of the variant reveals a widened access channel with a hydrophobic aromatic surface that is likely to contribute to the improved activity towards aromatic acceptors. The generation of this channel can be explained in terms of a cascade of structural changes arising from the Q345F exchange. The observed mechanisms are likely to be relevant for the design of other tailor-made enzymes.

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Primary Citation of related structures
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