ISDA: 5C80

Deposition Date 2015-06-25

Release Date 2016-07-20

Last Version Date 2024-01-10

Entry Detail

PDB ID:

5C80

Keywords:

TRANSFERASE

Title:

X-ray structure uridine phosphorylase from Vibrio cholerae in complex with uridine at 2.24 A resolution

Biological Source:

Source Organism:

Vibrio cholerae (Taxon ID: 666)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.24 Å

R-Value Free:

0.23

R-Value Work:

0.16

R-Value Observed:

0.17

Space Group:

P 1

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Uridine phosphorylase
Gene (Uniprot):udp
Chain IDs:A, B, C, D, E, F
Chain Length:253
Number of Molecules:6
Biological Source:Vibrio cholerae

UniProt ID:Q9K4U1 Pfam ID:PF01048 EC:2.4.2.3

Ligand Molecules

GOL

PEG

TRS

URI

Primary Citation

X-ray structures of uridine phosphorylase from Vibrio cholerae in complexes with uridine, thymidine, uracil, thymine, and phosphate anion: Substrate specificity of bacterial uridine phosphorylases

Prokofev, I.I, Lashkov, A.A, Gabdoulkhakov, A.G, Balaev, V.V, Seregina, T.A, Mironov, A.S, Betzel, C, Mikhailov, A.M.Show

Crystallography Reports 61 954 973 (2016)

DOI: 10.1134/S1063774516060134

Primary Citation of related structures