5C5V image
Deposition Date 2015-06-22
Release Date 2015-11-04
Last Version Date 2024-03-20
Entry Detail
PDB ID:
5C5V
Keywords:
Title:
Recombinant Inorganic Pyrophosphatase from T brucei brucei
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.35 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 42 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Acidocalcisomal pyrophosphatase
Gene (Uniprot):Tb11.02.4910
Chain IDs:A, B
Chain Length:342
Number of Molecules:2
Biological Source:Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Primary Citation
Structural and Functional Highlights of Vacuolar Soluble Protein 1 from Pathogen Trypanosoma brucei brucei
J.Biol.Chem. 290 30498 30513 (2015)
PMID: 26494625 DOI: 10.1074/jbc.M115.674176

Abstact

Trypanosoma brucei (T. brucei) is responsible for the fatal human disease called African trypanosomiasis, or sleeping sickness. The causative parasite, Trypanosoma, encodes soluble versions of inorganic pyrophosphatases (PPase), also called vacuolar soluble proteins (VSPs), which are localized to its acidocalcisomes. The latter are acidic membrane-enclosed organelles rich in polyphosphate chains and divalent cations whose significance in these parasites remains unclear. We here report the crystal structure of T. brucei brucei acidocalcisomal PPases in a ternary complex with Mg(2+) and imidodiphosphate. The crystal structure reveals a novel structural architecture distinct from known class I PPases in its tetrameric oligomeric state in which a fused EF hand domain arranges around the catalytic PPase domain. This unprecedented assembly evident from TbbVSP1 crystal structure is further confirmed by SAXS and TEM data. SAXS data suggest structural flexibility in EF hand domains indicative of conformational plasticity within TbbVSP1.

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Primary Citation of related structures
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