5C5K image
Deposition Date 2015-06-20
Release Date 2016-02-17
Last Version Date 2024-11-06
Entry Detail
PDB ID:
5C5K
Keywords:
Title:
Structure of the Pfr form of a canonical phytochrome
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.31 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Bacteriophytochrome
Gene (Uniprot):bphP
Mutagens:F469W
Chain IDs:A, B, C, D
Chain Length:524
Number of Molecules:4
Biological Source:Deinococcus radiodurans
Primary Citation
Crystal Structure of Deinococcus Phytochrome in the Photoactivated State Reveals a Cascade of Structural Rearrangements during Photoconversion.
Structure 24 448 457 (2016)
PMID: 26853942 DOI: 10.1016/j.str.2016.01.001

Abstact

Phytochromes are photochromic photoreceptors responsible for a myriad of red/far-red light-dependent processes in plants and microorganisms. Interconversion is initially driven by photoreversible isomerization of bilin, but how this alteration directs the photostate-dependent changes within the protein to actuate signaling is poorly understood. Here, we describe the structure of the Deinococcus phytochrome photosensory module in its near complete far-red light-absorbing Pfr state. In addition to confirming the 180° rotation of the D-pyrrole ring, the dimeric structure clearly identifies downstream rearrangements that trigger large-scale conformational differences between the dark-adapted and photoactivated states. Mutational analyses verified the importance of residues surrounding the bilin in Pfr stabilization, and protease sensitivity assays corroborated photostate alterations that propagate along the dimeric interface. Collectively, these data support a cooperative "toggle" model for phytochrome photoconversion and advance our understanding of the allosteric connection between the photosensory and output modules.

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