5C30 image
Deposition Date 2015-06-16
Release Date 2015-08-05
Last Version Date 2024-03-06
Entry Detail
PDB ID:
5C30
Title:
Crystal Structure of Rabbit Ryanodine Receptor 1 Repeat12 Domain
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.55 Å
R-Value Free:
0.16
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 31 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ryanodine receptor 1
Gene (Uniprot):RYR1
Mutagens:C906A, C937A, C1040A
Chain IDs:A
Chain Length:201
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Ligand Molecules
Primary Citation
Crystal structures of ryanodine receptor SPRY1 and tandem-repeat domains reveal a critical FKBP12 binding determinant.
Nat Commun 6 7947 7947 (2015)
PMID: 26245150 DOI: 10.1038/ncomms8947

Abstact

Ryanodine receptors (RyRs) form calcium release channels located in the membranes of the sarcoplasmic and endoplasmic reticulum. RyRs play a major role in excitation-contraction coupling and other Ca(2+)-dependent signalling events, and consist of several globular domains that together form a large assembly. Here we describe the crystal structures of the SPRY1 and tandem-repeat domains at 1.2-1.5 Å resolution, which reveal several structural elements not detected in recent cryo-EM reconstructions of RyRs. The cryo-EM studies disagree on the position of SPRY domains, which had been proposed based on homology modelling. Computational docking of the crystal structures, combined with FRET studies, show that the SPRY1 domain is located next to FK506-binding protein (FKBP). Molecular dynamics flexible fitting and mutagenesis experiments suggest a hydrophobic cluster within SPRY1 that is crucial for FKBP binding. A RyR1 disease mutation, N760D, appears to directly impact FKBP binding through interfering with SPRY1 folding.

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Primary Citation of related structures
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