5BY8 image
Deposition Date 2015-06-10
Release Date 2015-07-08
Last Version Date 2024-11-06
Entry Detail
PDB ID:
5BY8
Title:
The structure of Rpf2-Rrs1 explains its role in ribosome biogenesis
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.52 Å
R-Value Free:
0.19
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Rpf2
Gene (Uniprot):ANIA_10200
Chain IDs:A
Chain Length:231
Number of Molecules:1
Biological Source:Emericella nidulans FGSC A4
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Rrs1
Gene (Uniprot):ANIA_03745
Chain IDs:B
Chain Length:85
Number of Molecules:1
Biological Source:Emericella nidulans FGSC A4
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Primary Citation
The structure of Rpf2-Rrs1 explains its role in ribosome biogenesis.
Nucleic Acids Res. 43 7083 7095 (2015)
PMID: 26117542 DOI: 10.1093/nar/gkv640

Abstact

The assembly of eukaryotic ribosomes is a hierarchical process involving about 200 biogenesis factors and a series of remodeling steps. The 5S RNP consisting of the 5S rRNA, RpL5 and RpL11 is recruited at an early stage, but has to rearrange during maturation of the pre-60S ribosomal subunit. Rpf2 and Rrs1 have been implicated in 5S RNP biogenesis, but their precise role was unclear. Here, we present the crystal structure of the Rpf2-Rrs1 complex from Aspergillus nidulans at 1.5 Å resolution and describe it as Brix domain of Rpf2 completed by Rrs1 to form two anticodon-binding domains with functionally important tails. Fitting the X-ray structure into the cryo-EM density of a previously described pre-60S particle correlates with biochemical data. The heterodimer forms specific contacts with the 5S rRNA, RpL5 and the biogenesis factor Rsa4. The flexible protein tails of Rpf2-Rrs1 localize to the central protuberance. Two helices in the Rrs1 C-terminal tail occupy a strategic position to block the rotation of 25S rRNA and the 5S RNP. Our data provide a structural model for 5S RNP recruitment to the pre-60S particle and explain why removal of Rpf2-Rrs1 is necessary for rearrangements to drive 60S maturation.

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Primary Citation of related structures