5BX3 image
Entry Detail
PDB ID:
5BX3
Keywords:
Title:
Crystal structure of Thermoanaerobacterium xylanolyticum GH116 beta-glucosidase with deoxynojirimycin
Biological Source:
PDB Version:
Deposition Date:
2015-06-08
Release Date:
2016-05-18
Method Details:
Experimental Method:
Resolution:
1.96 Å
R-Value Free:
0.17
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:beta-glucosidase
Chain IDs:A
Chain Length:799
Number of Molecules:1
Biological Source:Thermoanaerobacterium xylanolyticum LX-11
Primary Citation
Bacterial beta-Glucosidase Reveals the Structural and Functional Basis of Genetic Defects in Human Glucocerebrosidase 2 (GBA2)
Acs Chem.Biol. 11 1891 1900 (2016)
PMID: 27115290 DOI: 10.1021/acschembio.6b00192

Abstact

Human glucosylcerebrosidase 2 (GBA2) of the CAZy family GH116 is responsible for the breakdown of glycosphingolipids on the cytoplasmic face of the endoplasmic reticulum and Golgi apparatus. Genetic defects in GBA2 result in spastic paraplegia and cerebellar ataxia, while cross-talk between GBA2 and GBA1 glucosylceramidases may affect Gaucher disease. Here, we report the first three-dimensional structure for any GH116 enzyme, Thermoanaerobacterium xylanolyticum TxGH116 β-glucosidase, alone and in complex with diverse ligands. These structures allow identification of the glucoside binding and active site residues, which are shown to be conserved with GBA2. Mutagenic analysis of TxGH116 and structural modeling of GBA2 provide a detailed structural and functional rationale for pathogenic missense mutations of GBA2.

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