5BWI image
Deposition Date 2015-06-08
Release Date 2015-10-28
Last Version Date 2024-11-13
Entry Detail
PDB ID:
5BWI
Keywords:
Title:
Crystallographic structure of a bacterial heparanase
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 41 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glycoside Hydrolase Family 79
Chain IDs:A, B
Chain Length:446
Number of Molecules:2
Biological Source:Burkholderia pseudomallei
Primary Citation
Functional and structural characterization of a heparanase.
Nat.Chem.Biol. 11 955 957 (2015)
PMID: 26565989 DOI: 10.1038/nchembio.1956

Abstact

We report the structural and functional characterization of a novel heparanase (BpHep) from the invasive pathogenic bacterium Burkholderia pseudomallei (Bp), showing ∼24% sequence identity with human heparanase (hHep). Site-directed mutagenesis studies confirmed the active site resi-dues essential for activity, and we found that BpHep has specificity for heparan sulfate. Finally, we describe the first heparanase X-ray crystal structure, which provides new insight into both substrate recognition and inhibitor design.

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