5BVW image
Deposition Date 2015-06-05
Release Date 2015-08-05
Last Version Date 2024-11-13
Entry Detail
PDB ID:
5BVW
Keywords:
Title:
Fragment-based discovery of potent and selective DDR1/2 inhibitors
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.94 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Epithelial discoidin domain-containing receptor 1
Gene (Uniprot):DDR1
Chain IDs:A
Chain Length:324
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Fragment-Based Discovery of Potent and Selective DDR1/2 Inhibitors.
Acs Med.Chem.Lett. 6 798 803 (2015)
PMID: 26191369 DOI: 10.1021/acsmedchemlett.5b00143

Abstact

The DDR1 and DDR2 receptor tyrosine kinases are activated by extracellular collagen and have been implicated in a number of human diseases including cancer. We performed a fragment-based screen against DDR1 and identified fragments that bound either at the hinge or in the back pocket associated with the DFG-out conformation of the kinase. Modeling based on crystal structures of potent kinase inhibitors facilitated the "back-to-front" design of potent DDR1/2 inhibitors that incorporated one of the DFG-out fragments. Further optimization led to low nanomolar, orally bioavailable inhibitors that were selective for DDR1 and DDR2. The inhibitors were shown to potently inhibit DDR2 activity in cells but in contrast to unselective inhibitors such as dasatinib, they did not inhibit proliferation of mutant DDR2 lung SCC cell lines.

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Primary Citation of related structures