5BVR image
Deposition Date 2015-06-05
Release Date 2016-03-23
Last Version Date 2024-01-10
Entry Detail
PDB ID:
5BVR
Keywords:
Title:
Actin binding domain of alpha-actinin from Schizosaccharomyces pombe
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.46 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Alpha-actinin-like protein 1
Gene (Uniprot):ain1
Chain IDs:A
Chain Length:236
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Ligand Molecules
Primary Citation
Characterisation of Schizosaccharomyces pombe alpha-actinin.
Peerj 4 e1858 e1858 (2016)
PMID: 27069798 DOI: 10.7717/peerj.1858

Abstact

The actin cytoskeleton plays a fundamental role in eukaryotic cells. Its reorganization is regulated by a plethora of actin-modulating proteins, such as a-actinin. In higher organisms, α-actinin is characterized by the presence of three distinct structural domains: an N-terminal actin-binding domain and a C-terminal region with EF-hand motif separated by a central rod domain with four spectrin repeats. Sequence analysis has revealed that the central rod domain of α-actinin from the fission yeast Schizosaccharomyces pombe consists of only two spectrin repeats. To obtain a firmer understanding of the structure and function of this unconventional α-actinin, we have cloned and characterized each structural domain. Our results show that this a-actinin isoform is capable of forming dimers and that the rod domain is required for this. However, its actin-binding and cross-linking activity appears less efficient compared to conventional α-actinins. The solved crystal structure of the actin-binding domain indicates that the closed state is stabilised by hydrogen bonds and a salt bridge not present in other α-actinins, which may reduce the affinity for actin.

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