5BV0 image
Deposition Date 2015-06-04
Release Date 2015-08-05
Last Version Date 2024-10-23
Entry Detail
PDB ID:
5BV0
Title:
Crystal Structure of a Complex Between the SNARE Nyv1 and the HOPS Vps33-Vps16 subcomplex from Chaetomium thermophilum
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SM (Sec1/Munc18-like) protein
Gene (Uniprot):CTHT_0057760
Chain IDs:A
Chain Length:669
Number of Molecules:1
Biological Source:Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Vps16
Chain IDs:B
Chain Length:229
Number of Molecules:1
Biological Source:Chaetomium thermophilum
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SNARE domain
Gene (Uniprot):CTHT_0032860
Chain IDs:C
Chain Length:45
Number of Molecules:1
Biological Source:Chaetomium thermophilum
Ligand Molecules
Primary Citation
A direct role for the Sec1/Munc18-family protein Vps33 as a template for SNARE assembly.
Science 349 1111 1114 (2015)
PMID: 26339030 DOI: 10.1126/science.aac7906

Abstact

Fusion of intracellular transport vesicles requires soluble N-ethylmaleimide-sensitive factor attachment protein receptors (SNAREs) and Sec1/Munc18-family (SM) proteins. Membrane-bridging SNARE complexes are critical for fusion, but their spontaneous assembly is inefficient and may require SM proteins in vivo. We report x-ray structures of Vps33, the SM subunit of the yeast homotypic fusion and vacuole protein-sorting (HOPS) complex, bound to two individual SNAREs. The two SNAREs, one from each membrane, are held in the correct orientation and register for subsequent complex assembly. Vps33 and potentially other SM proteins could thus act as templates for generating partially zipped SNARE assembly intermediates. HOPS was essential to mediate SNARE complex assembly at physiological SNARE concentrations. Thus, Vps33 appears to catalyze SNARE complex assembly through specific SNARE motif recognition.

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Primary Citation of related structures
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