5BUJ image
Deposition Date 2015-06-03
Release Date 2015-07-15
Last Version Date 2024-03-06
Entry Detail
PDB ID:
5BUJ
Title:
ERK2 complexed with a N-H tetrahydroazaindazole
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.85 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Mitogen-activated protein kinase 1
Gene (Uniprot):MAPK1
Chain IDs:A
Chain Length:361
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Ligand efficient tetrahydro-pyrazolopyridines as inhibitors of ERK2 kinase.
Bioorg.Med.Chem.Lett. 25 3626 3629 (2015)
PMID: 26144345 DOI: 10.1016/j.bmcl.2015.06.063

Abstact

A series of structure based drug design hypotheses and focused screening efforts drove improvements in the potency and lipophilic efficiency of tetrahydro-pyrazolopyridine based ERK2 inhibitors. Elaboration of a fragment chemical lead established a new lipophilic aryl-Tyr interaction resulting in a substantial potency improvement. Subsequent cleavage of the lipophilic moiety led to reconfiguration of the ligand bound binding cleft. The reconfiguration established a polar contact between a newly liberated N-H and a vicinal Asp, resulting in further improvements in lipophilic efficiency and in vitro clearance.

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Primary Citation of related structures