5BON image
Deposition Date 2015-05-27
Release Date 2015-08-05
Last Version Date 2024-01-10
Entry Detail
PDB ID:
5BON
Keywords:
Title:
Crystal structure of human Nudt15 (MTH2)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Probable 8-oxo-dGTP diphosphatase NUDT15
Gene (Uniprot):NUDT15
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:164
Number of Molecules:8
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Crystal structure, biochemical and cellular activities demonstrate separate functions of MTH1 and MTH2.
Nat Commun 6 7871 7871 (2015)
PMID: 26238318 DOI: 10.1038/ncomms8871

Abstact

Deregulated redox metabolism in cancer leads to oxidative damage to cellular components including deoxyribonucleoside triphosphates (dNTPs). Targeting dNTP pool sanitizing enzymes, such as MTH1, is a highly promising anticancer strategy. The MTH2 protein, known as NUDT15, is described as the second human homologue of bacterial MutT with 8-oxo-dGTPase activity. We present the first NUDT15 crystal structure and demonstrate that NUDT15 prefers other nucleotide substrates over 8-oxo-dGTP. Key structural features are identified that explain different substrate preferences for NUDT15 and MTH1. We find that depletion of NUDT15 has no effect on incorporation of 8-oxo-dGTP into DNA and does not impact cancer cell survival in cell lines tested. NUDT17 and NUDT18 were also profiled and found to have far less activity than MTH1 against oxidized nucleotides. We show that NUDT15 is not a biologically relevant 8-oxo-dGTPase, and that MTH1 is the most prominent sanitizer of the cellular dNTP pool known to date.

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Primary Citation of related structures
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