5BNI image
Deposition Date 2015-05-26
Release Date 2016-05-25
Last Version Date 2025-09-17
Entry Detail
PDB ID:
5BNI
Keywords:
Title:
Porcine CD38 complexed with complexed with a covalent intermediate, ribo-F-ribose-5'-phosphate
Biological Source:
Source Organism:
Sus scrofa (Taxon ID: 9823)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.27
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Uncharacterized protein
Chain IDs:A, B
Chain Length:232
Number of Molecules:2
Biological Source:Sus scrofa
Ligand Molecules
Primary Citation
Porcine CD38 exhibits prominent secondary NAD(+) cyclase activity.
Protein Sci. 25 650 661 (2016)
PMID: 26660500 DOI: 10.1002/pro.2859

Abstact

Cyclic ADP-ribose (cADPR) mobilizes intracellular Ca(2+) stores and activates Ca(2+) influx to regulate a wide range of physiological processes. It is one of the products produced from the catalysis of NAD(+) by the multifunctional CD38/ADP-ribosyl cyclase superfamily. After elimination of the nicotinamide ring by the enzyme, the reaction intermediate of NAD(+) can either be hydrolyzed to form linear ADPR or cyclized to form cADPR. We have previously shown that human CD38 exhibits a higher preference towards the hydrolysis of NAD(+) to form linear ADPR while Aplysia ADP-ribosyl cyclase prefers cyclizing NAD(+) to form cADPR. In this study, we characterized the enzymatic properties of porcine CD38 and revealed that it has a prominent secondary NAD(+) cyclase activity producing cADPR. We also determined the X-ray crystallographic structures of porcine CD38 and were able to observe conformational flexibility at the base of the active site of the enzyme which allow the NAD(+) reaction intermediate to adopt conformations resulting in both hydrolysis and cyclization forming linear ADPR and cADPR respectively.

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Primary Citation of related structures
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