5BMQ image
Deposition Date 2015-05-22
Release Date 2015-06-03
Last Version Date 2024-11-13
Entry Detail
PDB ID:
5BMQ
Keywords:
HYDROLASE
Title:
Crystal structure of L,D-transpeptidase (Yku) from Stackebrandtia nassauensis
Biological Source:
Source Organism:
Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) (Taxon ID: 446470)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.05 Å
R-Value Free:
0.17
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
I 21 3
5BMQ validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ErfK/YbiS/YcfS/YnhG family protein
Gene (Uniprot):Snas_6095
Chain IDs:A
Chain Length:243
Number of Molecules:1
Biological Source:Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21)
UniProt ID:D3Q1D9 Pfam ID:PF03734
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Ligand Molecules
DIO
GOL
SO4
Primary Citation
Crystal structures of L,D-transpeptidases (Yku)
To be Published ? ? ? (?)
Primary Citation of related structures
5BMQ
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