5B1W image
Entry Detail
PDB ID:
5B1W
Title:
Crystal structure of human dendritic cell inhibitory receptor (DCIR) C-type lectin domain in ligand-free form
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2015-12-21
Release Date:
2016-05-11
Method Details:
Experimental Method:
Resolution:
3.05 Å
R-Value Free:
0.28
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:C-type lectin domain family 4 member A
Chain IDs:A, B, C, D
Chain Length:134
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Crystal structure of human dendritic cell inhibitory receptor C-type lectin domain reveals the binding mode with N-glycan
Febs Lett. 590 1280 1288 (2016)
PMID: 27015765 DOI: 10.1002/1873-3468.12162

Abstact

Human dendritic cell inhibitory receptor (DCIR) is a C-type lectin receptor expressed in classical dendritic cells and accepts several oligosaccharide ligands including N-glycans. Here, we report the crystal structures of human DCIR C-type lectin domains in the absence and presence of a branched N-glycan unit. The domain has a typical C-type lectin fold and two bound calcium ions. In the ligand-bound form, the disaccharide unit (GlcNAcβ1-2Man) acceptably fits the electron density map, indicating that it forms the main epitope. The recognition of the nonterminal N-glycan unit explains the relatively broad specificity of this lectin.

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Primary Citation of related structures