5B0U image
Deposition Date 2015-11-04
Release Date 2016-01-13
Last Version Date 2024-03-20
Entry Detail
PDB ID:
5B0U
Title:
Crystal structure of the mutated 19 kDa protein of Oplophorus luciferase (nanoKAZ)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.71 Å
R-Value Free:
0.22
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 42 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Oplophorus-luciferin 2-monooxygenase catalytic subunit
Mutagens:A4E, Q11R, Q18L, L27V, A33N, K43R, V44I, A54I, F68D, L72Q, M75K,I90V, P115E, Q124K, Y138I, N166R
Chain IDs:A, B
Chain Length:191
Number of Molecules:2
Biological Source:Oplophorus gracilirostris
Primary Citation
Crystal structure of nanoKAZ: The mutated 19 kDa component of Oplophorus luciferase catalyzing the bioluminescent reaction with coelenterazine
Biochem.Biophys.Res.Commun. 470 88 93 (2016)
PMID: 26746005 DOI: 10.1016/j.bbrc.2015.12.123

Abstact

The 19 kDa protein (KAZ) of Oplophorus luciferase is a catalytic component, that oxidizes coelenterazine (a luciferin) with molecular oxygen to emit light. The crystal structure of the mutated 19 kDa protein (nanoKAZ) was determined at 1.71 Å resolution. The structure consists of 11 antiparallel β-strands forming a β-barrel that is capped by 4 short α-helices. The structure of nanoKAZ is similar to those of fatty acid-binding proteins (FABPs), even though the amino acid sequence similarity was very low between them. The coelenterazine-binding site and the catalytic site for the luminescence reaction might be in a central cavity of the β-barrel structure.

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Primary Citation of related structures