5AYB image
Deposition Date 2015-08-12
Release Date 2016-04-27
Last Version Date 2023-11-08
Entry Detail
PDB ID:
5AYB
Keywords:
Title:
Crystal structure of GH1 Beta-Glucosidase TD2F2 N223G mutant
Biological Source:
Source Organism:
metagenomes (Taxon ID: 408169)
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.16
R-Value Work:
0.13
R-Value Observed:
0.13
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:BETA-GLUCOSIDASE
Mutagens:N223G
Chain IDs:A
Chain Length:457
Number of Molecules:1
Biological Source:metagenomes
Primary Citation
Crystal structure and identification of a key amino acid for glucose tolerance, substrate specificity, and transglycosylation activity of metagenomic beta-glucosidase Td2F2
Febs J. 283 2340 2353 (2016)
PMID: 27092463 DOI: 10.1111/febs.13743

Abstact

UNLABELLED β-Glucosidase Td2F2 isolated from a compost metagenome has high glucose tolerance and transglycosylation activity. In this study, we determined the high-resolution crystal structure of Td2F2. It has a unique structure at the -1 subsite that is important for substrate specificity but not for glucose tolerance. To elucidate the mechanism(s) of glucose tolerance, we isolated a glucose-sensitive Td2F2 mutant using random mutagenesis. In this mutant, Asn223 residue located between subsites +1 and +2 was mutated. The Asn223 mutation resulted in reduced glucose tolerance and transglycosylation activity, and drastically changed substrate specificity. These results indicate that the structure between subsites +1 and +2 is critical for the glucose tolerance and substrate specificity of Td2F2. Our findings shed light on the glucose tolerance and transglycosylation activity mechanisms of glycoside hydrolase family 1 β-glucosidases. DATABASE The atomic coordinates and structure factors (codes 3WH5, 3WH6, 3WH8, 3WH7, 5AYB, and 5AYI) have been deposited in the Protein Data Bank (http://wwpdb.org/).

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