5AX7 image
Entry Detail
PDB ID:
5AX7
Keywords:
Title:
yeast pyruvyltransferase Pvg1p
Biological Source:
PDB Version:
Deposition Date:
2015-07-16
Release Date:
2016-06-08
Method Details:
Experimental Method:
Resolution:
2.46 Å
R-Value Free:
0.18
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 31
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Pyruvyl transferase 1
Chain IDs:A, B
Chain Length:348
Number of Molecules:2
Biological Source:Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Ligand Molecules
Primary Citation
A rationally engineered yeast pyruvyltransferase Pvg1p introduces sialylation-like properties in neo-human-type complex oligosaccharide
Sci Rep 6 26349 26349 (2016)
PMID: 27194449 DOI: 10.1038/srep26349

Abstact

Pyruvylation onto the terminus of oligosaccharide, widely seen from prokaryote to eukaryote, confers negative charges on the cell surface and seems to be functionally similar to sialylation, which is found at the end of human-type complex oligosaccharide. However, detailed molecular mechanisms underlying pyruvylation have not been clarified well. Here, we first determined the crystal structure of fission yeast pyruvyltransferase Pvg1p at a resolution of 2.46 Å. Subsequently, by combining molecular modeling with mutational analysis of active site residues, we obtained a Pvg1p mutant (Pvg1p(H168C)) that efficiently transferred pyruvyl moiety onto a human-type complex glycopeptide. The resultant pyruvylated human-type complex glycopeptide recognized similar lectins on lectin arrays as the α2,6-sialyl glycopeptides. This newly-generated pyruvylation of human-type complex oligosaccharides would provide a novel method for glyco-bioengineering.

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Primary Citation of related structures