5AVG image
Entry Detail
PDB ID:
5AVG
Keywords:
Title:
The 0.95 angstrom structure of thaumatin crystallized in high-strength agarose hydrogel
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2015-06-16
Release Date:
2015-07-08
Method Details:
Experimental Method:
Resolution:
0.95 Å
R-Value Free:
0.14
R-Value Work:
0.12
R-Value Observed:
0.12
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Thaumatin-1
Chain IDs:A
Chain Length:206
Number of Molecules:1
Biological Source:Thaumatococcus daniellii
Primary Citation
Growth of protein crystals in hydrogels prevents osmotic shock
J.Am.Chem.Soc. 134 5786 5789 (2012)
PMID: 22435400 DOI: 10.1021/ja301584y

Abstact

High-throughput protein X-ray crystallography offers a significant opportunity to facilitate drug discovery. The most reliable approach is to determine the three-dimensional structure of the protein-ligand complex by soaking the ligand in apo crystals. However, protein apo crystals produced by conventional crystallization in a solution are fatally damaged by osmotic shock during soaking. To overcome this difficulty, we present a novel technique for growing protein crystals in a high-concentration hydrogel that is completely gellified and exhibits high strength. This technique allowed us essentially to increase the mechanical stability of the crystals, preventing serious damage to the crystals caused by osmotic shock. Thus, this method may accelerate structure-based drug discoveries.

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