5AOO image
Deposition Date 2015-09-11
Release Date 2016-03-09
Last Version Date 2024-01-10
Entry Detail
PDB ID:
5AOO
Keywords:
Title:
X-ray structure of a human Kobuvirus: Aichi virus A (AiV)
Biological Source:
Source Organism:
AICHIVIRUS A (Taxon ID: 72149)
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Work:
0.33
R-Value Observed:
0.33
Space Group:
I 2 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:VP0
Chain IDs:A
Chain Length:253
Number of Molecules:1
Biological Source:AICHIVIRUS A
Polymer Type:polypeptide(L)
Molecule:VP1
Chain IDs:B
Chain Length:370
Number of Molecules:1
Biological Source:AICHIVIRUS A
Polymer Type:polypeptide(L)
Molecule:VP3
Chain IDs:C
Chain Length:223
Number of Molecules:1
Biological Source:AICHIVIRUS A
Primary Citation
The Use of Noncrystallographic Symmetry Averaging to Solve Structures from Data Affected by Perfect Hemihedral Twinning
Acta Crystallogr.,Sect.F 72 188 ? (2016)
PMID: 26919522 DOI: 10.1107/S2053230X16000923

Abstact

Hemihedral twinning is a crystal-growth anomaly in which a specimen is composed of two crystal domains that coincide with each other in three dimensions. However, the orientations of the crystal lattices in the two domains differ in a specific way. In diffraction data collected from hemihedrally twinned crystals, each observed intensity contains contributions from both of the domains. With perfect hemihedral twinning, the two domains have the same volumes and the observed intensities do not contain sufficient information to detwin the data. Here, the use of molecular replacement and of noncrystallographic symmetry (NCS) averaging to detwin a 2.1 Å resolution data set for Aichi virus 1 affected by perfect hemihedral twinning is described. The NCS averaging enabled the correction of errors in the detwinning introduced by the differences between the molecular-replacement model and the crystallized structure. The procedure permitted the structure to be determined from a molecular-replacement model that had 16% sequence identity and a 1.6 Å r.m.s.d. for C(α) atoms in comparison to the crystallized structure. The same approach could be used to solve other data sets affected by perfect hemihedral twinning from crystals with NCS.

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