5ANR image
Deposition Date 2015-09-08
Release Date 2015-10-21
Last Version Date 2024-01-10
Entry Detail
PDB ID:
5ANR
Title:
Structure of a human 4E-T - DDX6 - CNOT1 complex
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1
Gene (Uniprot):CNOT1
Chain IDs:A
Chain Length:258
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:PROBABLE ATP-DEPENDENT RNA HELICASE DDX6
Gene (Uniprot):DDX6
Chain IDs:B
Chain Length:378
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:EUKARYOTIC TRANSLATION INITIATION FACTOR 4E TRANSPORTER
Gene (Uniprot):EIF4ENIF1
Chain IDs:C
Chain Length:44
Number of Molecules:1
Biological Source:HOMO SAPIENS
Primary Citation
Structure of a Human 4E-T/Ddx6/Cnot1 Complex Reveals the Different Interplay of Ddx6-Binding Proteins with the Ccr4-not Complex.
Cell Rep. 13 703 ? (2015)
PMID: 26489469 DOI: 10.1016/J.CELREP.2015.09.033

Abstact

The DEAD-box protein DDX6 is a central component of translational repression mechanisms in maternal mRNA storage in oocytes and microRNA-mediated silencing in somatic cells. DDX6 interacts with the CCR4-NOT complex and functions in concert with several post-transcriptional regulators, including Edc3, Pat1, and 4E-T. We show that the conserved CUP-homology domain (CHD) of human 4E-T interacts directly with DDX6 in both the presence and absence of the central MIF4G domain of CNOT1. The 2.1-Å resolution structure of the corresponding ternary complex reveals how 4E-T CHD wraps around the RecA2 domain of DDX6 and contacts CNOT1. Although 4E-T CHD lacks recognizable sequence similarity with Edc3 or Pat1, it shares the same DDX6-binding surface. In contrast to 4E-T, however, the Edc3 and Pat1 FDF motifs dissociate from DDX6 upon CNOT1 MIF4G binding in vitro. The results underscore the presence of a complex network of simultaneous and/or mutually exclusive interactions in DDX6-mediated repression.

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