5AJC image
Deposition Date 2015-02-20
Release Date 2016-03-02
Last Version Date 2024-01-10
Entry Detail
PDB ID:
5AJC
Title:
X-ray structure of RSL lectin in complex with sialyl lewis X tetrasaccharide
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PUTATIVE FUCOSE-BINDING LECTIN PROTEIN
Chain IDs:A, B, C
Chain Length:90
Number of Molecules:3
Biological Source:RALSTONIA SOLANACEARUM
Peptide-like Molecules
PRD_900120
PRD_900122
Primary Citation
The Hidden Conformation of Lewis X, a Human Histo-Blood Group Antigen, is a Determinant for Recognition by Pathogen Lectins
Acs Chem.Biol. 11 2011 ? (2016)
PMID: 27198630 DOI: 10.1021/ACSCHEMBIO.6B00333

Abstact

Histo-blood group epitopes are fucosylated branched oligosaccharides with well-defined conformations in solution that are recognized by receptors, such as lectins from pathogens. We report here the results of a series of experimental and computational endeavors revealing the unusual distortion of histo-blood group antigens by bacterial and fungal lectins. The Lewis x trisaccharide adopts a rigid closed conformation in solution, while crystallography and molecular dynamics reveal several higher energy open conformations when bound to the Ralstonia solanacearum lectin, which is in agreement with thermodynamic and kinetic measurements. Extensive molecular dynamics simulations confirm rare transient Le(x) openings in solution, frequently assisted by distortion of the central N-acetyl-glucosamine ring. Additional directed molecular dynamic trajectories revealed the role of a conserved tryptophan residue in guiding the fucose into the binding site. Our findings show that conformational adaptation of oligosaccharides is of paramount importance in cell recognition and should be considered when designing anti-infective glyco-compounds.

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