5AJA image
Entry Detail
PDB ID:
5AJA
Keywords:
Title:
Crystal structure of mandrill SAMHD1 (amino acid residues 1-114) bound to Vpx isolated from mandrill and human DCAF1 (amino acid residues 1058-1396)
Biological Source:
PDB Version:
Deposition Date:
2015-02-20
Release Date:
2015-04-22
Method Details:
Experimental Method:
Resolution:
2.65 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:PROTEIN VPRBP
Chain IDs:A
Chain Length:361
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Description:VPX PROTEIN
Chain IDs:B
Chain Length:102
Number of Molecules:1
Biological Source:SIMIAN IMMUNODEFICIENCY VIRUS
Polymer Type:polypeptide(L)
Description:SAM DOMAIN AND HD DOMAIN-CONTAINING PROTEIN
Chain IDs:C
Chain Length:117
Number of Molecules:1
Biological Source:MANDRILLUS SPHINX
Ligand Molecules
Primary Citation
Molecular Determinants for Recognition of Divergent Samhd1 Proteins by the Lentiviral Accessory Protein Vpx.
Cell Host Microbe. 17 489 ? (2015)
PMID: 25856754 DOI: 10.1016/J.CHOM.2015.03.004

Abstact

The SAMHD1 triphosphohydrolase inhibits HIV-1 infection of myeloid and resting T cells by depleting dNTPs. To overcome SAMHD1, HIV-2 and some SIVs encode either of two lineages of the accessory protein Vpx that bind the SAMHD1 N or C terminus and redirect the host cullin-4 ubiquitin ligase to target SAMHD1 for proteasomal degradation. We present the ternary complex of Vpx from SIV that infects mandrills (SIVmnd-2) with the cullin-4 substrate receptor, DCAF1, and N-terminal and SAM domains from mandrill SAMHD1. The structure reveals details of Vpx lineage-specific targeting of SAMHD1 N-terminal "degron" sequences. Comparison with Vpx from SIV that infects sooty mangabeys (SIVsmm) complexed with SAMHD1-DCAF1 identifies molecular determinants directing Vpx lineages to N- or C-terminal SAMHD1 sequences. Inspection of the Vpx-DCAF1 interface also reveals conservation of Vpx with the evolutionally related HIV-1/SIV accessory protein Vpr. These data suggest a unified model for how Vpx and Vpr exploit DCAF1 to promote viral replication.

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Primary Citation of related structures